| Final | |||||
| Lane | Comp.No. | Name | YoB | Club/Country | Time |
| 1 | 1 | Tiago Venancio | 87 | Portugal | 50.04 |
| 2 | 2 | Martin Verner | 80 | Czech Rep | 49.84 |
| 3 | 3 | Emmanuel Vanluchene | 92 | Belgium | 49.81 |
| 4 | 4 | Konrad Czerniak | 89 | Poland | 49.14 |
| 5 | 5 | Markus Deibler | 90 | Germany | 49.23 |
| 6 | 6 | Petter Stymne | 83 | Sweden | 49.82 |
| 7 | 7 | Steffen Deibler | 87 | Germany | 49.86 |
| 8 | 8 | Stefan Nystrand | 81 | Sweden | 50.13 |